London Daily

Focus on the big picture.
Sunday, Sep 13, 2026

Omicron: How do you detect it?

Omicron: How do you detect it?

The first cases of the new Omicron variant of coronavirus have now been detected in the UK, after it was highlighted by scientists in South Africa as a potentially worrying new strain.
What tests are used to detect Omicron?


Swabs from PCR tests, which are sent to a lab for analysis, detect whether people are infected with coronavirus or not.

Depending on which lab the swabs are sent to, some can also help identify particular variants, such as Delta or Omicron.

Between a third and a half of UK labs - but not all - have the required technology to do this.

PCR tests are the ones you can order from the government website if you have symptoms, or order from a private company if you need one for travel purposes. There are many different makes.

How do we know that Omicron is in the UK?


The swabs from PCR tests that have given a positive result for what looks like Omicron have been sent to a lab for a full genetic analysis, using a technique known as genomic sequencing.

This has confirmed that some people have indeed been infected with the latest variant.

This laboratory analysis of the genetic material of the virus is key to detecting variants and finding out how they act.

It is likely there are many more cases of the variant already in the UK, but as yet undetected, because it can take a couple of weeks for this process to be completed.

The dominant variant of coronavirus is still Delta, which is responsible for around 40,000 new cases every day in the UK.

Do lateral flow tests detect Omicron?


Rapid or lateral flow tests, which can be used at home, can't tell you which variant you're infected with - but they are still thought to be able to tell you if you're negative or positive, even with Omicron.

What's the difference between Omicron and other variants?


The Omicron variant has lots of different mutations that haven't been seen before, and many that have.

A large number of them are on the spike protein of the virus, which is the target of most vaccines, and that's the main concern.

In standard tests, Omicron has what's known as an "S-gene dropout" which makes tracking positive cases which resemble the variant pretty easy.

But not all "S-gene dropouts" will necessarily be omicron - full genomic sequencing is needed to be sure.


What role does genomic sequencing play?


Analysing the genetic make-up of the virus is a crucial part of working how which variant is involved.

Up to 20% of the swabs from positive test results in the UK each week, or around 60,000 cases, are sent for genomic sequencing.

By looking closely at the genetic material provided, scientists can confirm whether someone is positive with Omicron or the already widely-circulating Delta.

This process only provides information about the swabs that are analysed - but using those results, scientists are able to estimate what proportion of new cases could be the new variant.

Scientists in the UK and South African are at the forefront of this technology, which is why most new variants have been detected in these countries. But that doesn't always mean they originated there.

What do we know about Omicron?


Very little is known about how the variant acts or how much of a threat it could be.

For example, it's not clear if it spreads more easily, if it makes people more unwell than other variants or if protection from vaccines will be less than previously thought.

But on paper it looks worrying and that's why governments are acting quickly, in case it's bad news.

Newsletter

Related Articles

0:00
0:00
Close
Tesco Alerts Police After Scammers Use Its Branding in AI-Generated Fraud
Lindy Cameron Appointed First Female Permanent Under-Secretary at UK Foreign Office
UK Government to Rewrite Student Loan Guidance After Mis-Selling Criticism
Welsh First Minister Warns Andy Burnham Government to Respect Devolution
Trump’s Falkland Islands Remarks Trigger New Diplomatic Tension With Britain
Reform UK Receives Record £72 Million Donation From Cryptocurrency Billionaires
UK Bans Imports From Israeli West Bank Settlements and Sanctions Supporting Institutions
Bayeux Tapestry Draws Large Crowds at British Museum
Cuts to International Aid Raise Concerns Over Fragile Overseas Health Systems
UK Airlines and Logistics Operators Adjust Capacity as Fuel Costs Rise
UK Mortgage Arrears Edge Lower in Second Quarter
UK Government Advances New Devolution Offers for English Councils
UK Parliament Begins Debate on NHS Governance and Single Patient Record Reforms
Andy Burnham Launches Number 10 North Devolution Initiative
UK Parliament Rejects Assisted Dying Bill for Terminally Ill Adults
UK Bans Goods From Israeli Settlements in the Occupied West Bank
UK Economy Grows 0.4% in July as Technology Services Strengthen
Metropolitan Police Continue Investigation Into Reform UK Political Financing
Chinese Crypto Entrepreneur Leon Li Identified as Seller of £190 Million London Mansion
Trades Union Congress Proposes Social Energy Tariff Funded by Higher Bank Surcharge
British Chambers of Commerce Calls for State Pension Triple Lock to Be Scrapped
Anthropic Says Claude Helped Disrupt Biological Weapons and Cyber Espionage Threats
UK Imposes Sanctions Over Israeli Settlements and West Bank Violence
UK Reimposes Sectoral Sanctions on Iran’s Aviation, Shipping and Energy Networks
UK Economy Grows 0.4% in July as AI and Programming Services Lift Activity
UK House of Commons Rejects Assisted Dying Bill by 286 Votes to 270
UK Reviews Nationwide Emergency Alert Tests After Systems Meet Reliability Targets
UK Seeks Faster Rail Links Across Northern Industrial Corridors
British Business Bank Allocates £150 Million for High-Growth Companies in Northern England
BBC Warns Staff Strikes Are Possible Amid Pay Dispute and £500 Million Savings Drive
UK Backs Short Extension of UN Sudan Sanctions Regime
Prime Minister Andy Burnham Defends Early Prison Release Reforms and Growth Strategy
Reform UK Faces Scrutiny Over Alleged Effort to Circumvent Foreign Donation Rules
UK Analysts Warn Tax Rises or Spending Cuts May Be Needed to Preserve Fiscal Headroom
Jaguar Land Rover Plans Up to 4,000 Job Cuts in £1.7 Billion Cost-Saving Drive
UK Chancellor Warns of Difficult October Budget as Borrowing Costs Rise
UK Declares Israeli Occupation of West Bank Unlawful and Expands Sanctions
UK House of Commons Rejects Assisted Dying Bill for England and Wales
English Councils to Gain Power to Introduce Tourist Taxes by 2028
Kemi Badenoch Reshuffles Conservative Shadow Cabinet
Firefighters Make Progress Containing Major Wildfires in South Wales
John Lewis Partnership Reports £124 Million Loss
Study Says UK AI Data Centres Will Create Only a Quarter of Forecast Jobs
UK Government Considers Higher Industrial Water Prices Amid Supply Pressures
Andy Burnham Holds First Call With Donald Trump as UK Prime Minister
NHS Records Busiest Summer on Record as Heatwaves Drive Hospital Admissions
Home Secretary Orders Police Crackdown on Far-Right Anti-Migrant Vigilantes
UK Supreme Court Rules Northern Ireland Religious Education Curriculum Breaches Human Rights Standards
Markets Price in Four Bank of England Rate Rises by Next Summer
House of Commons Prepares Free Vote on Assisted Dying Bill
×